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2 article(s) from Pérez, Serge

Computational tools for drawing, building and displaying carbohydrates: a visual guide

Kanhaya Lal,
Rafael Bermeo and
Serge Perez

Beilstein J. Org. Chem. 2020, 16, 2448–2468, doi:10.3762/bjoc.16.199

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Graphical Abstract

Figure 1: Levels of representation of glycans: from sketching to virtual reality.

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Figure 2: Depiction of lactose by various glycan sketching tools.

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Figure 3: Examples of different glycan structure text formats for the same glycan. Data in these formats are ...

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Figure 4: From top to bottom: SugarSketcher [36] interface with a glycan structure drawn using the “Quick Mode”. ...

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Figure 5: GlyTouCan [38] interface allows to search for glycans structures in the database. Data contained in Gly...

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Figure 6: From top to bottom: GlycanBuilder2 [46] interface with a glycan image in SNFG notation. Original Glycan...

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Figure 7: From top to bottom: DrawGlycan-SNFG [51] web interface with a glycan text input and the resulting image...

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Figure 8: From top to bottom: Glyco.me SugarBuilder [56] interface with a glycan structure showing options to def...

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Figure 9: From top to bottom: Sweet II [62] web-interface with a text input to generate a 3D model. GLYCAM Carboh...

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Figure 10: PolysGlycanBuilder [77] interface illustrating glycan drawing using SNFG symbols. The glycan can be fur...

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Figure 11: From top to bottom: 3D-SNFG representation of glycan using 3D-SNFG script integrated VMD [79]. LiteMol [80]...

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Review

Published 02 Oct 2020

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Glycoscience@Synchrotron: Synchrotron radiation applied to structural glycoscience

Serge Pérez and
Daniele de Sanctis

Beilstein J. Org. Chem. 2017, 13, 1145–1167, doi:10.3762/bjoc.13.114

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Graphical Abstract

Figure 1: Complementarity of synchrotron radiation and neutron sources to investigate the structure of matter....

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Figure 2: A representation of a synchrotron storage ring, including linear accelerator, booster and two beaml...

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Figure 3: Schematic representation of a sector of a storage ring. Bending magnets and insertion devices are a...

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Figure 4: Structural features of the resin glycoside tricolorin A. (a) Extracted from the Mexican variety of ...

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Figure 5: Powder diffractogram measured on a synthetic pentasaccharide from heparin, at ESRF beamline ID31, λ...

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Figure 6: Three dimensional ribbon representation of a heavily N-glycosylated Aspergilllus sp. Family GH3 β-D...

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Figure 7: Histogram of the number of deposited crystal structures of glycan-binding proteins deposited over t...

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Figure 8: Ribbon diagram representations of prototypical members of the GT-A and GT-B super-family fold, resp...

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Figure 9: Representation of the FUT1 structure determined in complex with the acceptor (carbon atoms in green...

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Figure 10: Representation of the seven folds most commonly found in glycoside hydrolases. From the classificat...

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Figure 11: The multivalent carbohydrate binding features of lectins from X-ray structures. (a) Monovalent. E-s...

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Figure 12: Three-dimensional depiction of the ternary complex formed by a heparin mimetic in interaction with ...

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Figure 13: 3D representation of different sugar transporter structures: (left to right, top to down) lactose p...

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Figure 14: Kinetic crystallography. Protein crystals are soaked with the cage compound (Step 1) followed by fl...

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Figure 15: Reconstruction of the full three-dimensional structure of the soluble lectin (BC2L-C) from the oppo...

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Figure 16: Characterization by synchrotron X-ray reflectometry of the transverse structures of a model membran...

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Figure 17: Complementary use of X-ray synchrotron and neutron fiber diffraction to unravel the three-dimension...

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Figure 18: Scanning electron micrograph of high-quality micrometer-sized A-amylose microcrystals grown from sh...

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Figure 19: Cartography of distribution and orientation of cellulose in wood using a 3 µm X-ray beam. The scann...

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Figure 20: Structural micro-diffraction scanning of a starch granule from Phajus grandifolius with dimensions ...

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Review

Published 14 Jun 2017

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